Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1039751885-024404-20624 Query= (437 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 1,247,039 sequences; 397,579,747 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
RID: 1039751885-024404-20624
Query= (437 letters)
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 1,247,039 sequences; 397,579,747 total letters
If you have any problems or questions with the results of this search please refer to the BLAST FAQs
Taxonomy reports
Score E Sequences producing significant alignments: (bits) Value gi|17558812|ref|NP_505552.1| Putative nuclear protein, nema... 31 2.7 Alignments
Score E Sequences producing significant alignments: (bits) Value gi|17558812|ref|NP_505552.1| Putative nuclear protein, nema... 31 2.7
>gi|17558812|ref|NP_505552.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] gi|7497793|pir||T20126 hypothetical protein C50H2.4 - Caenorhabditis elegans gi|3875137|emb|CAA98252.1| Hypothetical protein C50H2.4 [Caenorhabditis elegans] Length = 273 Score = 31.2 bits (69), Expect = 2.7 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 Query: 97 LLLPQNPKTNPPIFPYLPPLHQP 29 + P P T P+F Y+PPL+QP Sbjct: 240 IYFPSPPMTPKPVFTYIPPLNQP 262
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Dec 9, 2002 8:40 PM Number of letters in database: 397,579,747 Number of sequences in database: 1,247,039 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 317,382,623 Number of Sequences: 1247039 Number of extensions: 5437754 Number of successful extensions: 26638 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 25594 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 26629 length of database: 397,579,747 effective HSP length: 121 effective length of database: 246,688,028 effective search space used: 5920512672 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
