BLASTX 2.2.5 [Nov-16-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1039752343-028193-367

Query= 
         (293 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,247,039 sequences; 397,579,747 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

Related Structures

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13359451|dbj|BAB33421.1|  putative senescence-associated ...   167   2e-42 
gi|23482977|gb|EAA18798.1|  hypothetical protein [Plasmodium...    60   5e-09 
gi|23479816|gb|EAA16545.1|  hypothetical protein [Plasmodium...    57   4e-08 
gi|23488483|gb|EAA21327.1|  putative senescence-associated p...    56   1e-07 
gi|15834739|ref|NP_296498.1|  hypothetical protein [Chlamydi...    40   0.007 
gi|11282814|pir||G81737  hypothetical protein TC0130 [import...    40   0.007 
gi|15921441|ref|NP_377110.1|  62aa long conserved hypothetic...    39   0.021 
gi|14590152|ref|NP_142217.1|  hypothetical protein [Pyrococc...    33   0.88  
gi|7657166|ref|NP_055027.1|  homeo box C11; homeobox protein...    30   5.7   
gi|7516816|pir||G72579  hypothetical protein APE1919 - Aerop...    30   7.4   
gi|21300339|gb|EAA12484.1|  agCP11254 [Anopheles gambiae str...    30   9.7   
gi|24158778|pdb|1KB9|H  Chain H, Yeast Cytochrome Bc1 Comple...    30   9.7   
gi|6322295|ref|NP_012369.1|  Ubiquinol cytochrome-c reductas...    30   9.7   

Alignments


>gi|13359451|dbj|BAB33421.1|   putative senescence-associated protein [Pisum sativum]
          Length = 282

 Score =  167 bits (424), Expect(2) = 2e-42
 Identities = 78/84 (92%), Positives = 78/84 (92%)
 Frame = +3

Query: 6   VELLSRHGHQ*GKTNLSHDGLIPAHVPYWWVNNPTLGEFCFTMIGRADIEGSKSNVAMNA 185
           VELL RH HQ GKTNLSHDGLIPAHVPYWWVNNPTLGEFCFTMIGRADIEGSKSNVAMNA
Sbjct: 49  VELLLRHCHQWGKTNLSHDGLIPAHVPYWWVNNPTLGEFCFTMIGRADIEGSKSNVAMNA 108

Query: 186 WLPQASYPCGNFSDTSSFKLRRSK 257
           WLPQASYPCGNFSDTSSFK R  K
Sbjct: 109 WLPQASYPCGNFSDTSSFKFRSLK 132




 Score = 25.4 bits (54), Expect(2) = 2e-42
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +1

Query: 253 LKDR*ATLSRFVF 291
           LKDR ATLSRFVF
Sbjct: 131 LKDRLATLSRFVF 143



>gi|23482977|gb|EAA18798.1|   hypothetical protein [Plasmodium yoelii yoelii]
          Length = 107

 Score = 60.5 bits (145), Expect = 5e-09
 Identities = 34/50 (68%), Positives = 36/50 (72%)
 Frame = +3

Query: 132 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKLRRSKGSIGHAFT 281
           MIGRADIEGSKS VA +AW PQASYPC       SF   + KGSIGHAFT
Sbjct: 1   MIGRADIEGSKSYVARSAWQPQASYPC-----VPSF--CKYKGSIGHAFT 43



>gi|23479816|gb|EAA16545.1|   hypothetical protein [Plasmodium yoelii yoelii]
          Length = 177

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 31/50 (62%), Positives = 32/50 (64%)
 Frame = +3

Query: 132 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKLRRSKGSIGHAFT 281
           MIGRADIEGSKS VA +AW PQASYPC               GSIGHAFT
Sbjct: 1   MIGRADIEGSKSYVARSAWQPQASYPC---------------GSIGHAFT 35



>gi|23488483|gb|EAA21327.1|   putative senescence-associated protein [Plasmodium yoelii yoelii]
          Length = 205

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 31/50 (62%), Positives = 31/50 (62%)
 Frame = +3

Query: 132 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKLRRSKGSIGHAFT 281
           MIGRADIE SKS VA NAW PQASYPC               GSIGHAFT
Sbjct: 1   MIGRADIERSKSYVAKNAWQPQASYPC---------------GSIGHAFT 35



>gi|15834739|ref|NP_296498.1|   hypothetical protein [Chlamydia muridarum]
 gi|11282815|pir||F81738   hypothetical protein TC0114 [imported] - Chlamydia muridarum
           (strain Nigg)
 gi|7190150|gb|AAF38993.1|   hypothetical protein [Chlamydia muridarum]
          Length = 122

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 21/38 (55%), Positives = 22/38 (57%)
 Frame = +2

Query: 95  GEQSNTW*ILLHNDRKSRHRRIKKQRRYERLAATSQLS 208
           GEQ N W +L   D  SRHR  K  RRYE L A S LS
Sbjct: 66  GEQPNPWDLLQPQDAMSRHRGAKPPRRYELLVAISLLS 103



>gi|11282814|pir||G81737   hypothetical protein TC0130 [imported] - Chlamydia muridarum
           (strain Nigg)
          Length = 122

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 21/38 (55%), Positives = 22/38 (57%)
 Frame = +2

Query: 95  GEQSNTW*ILLHNDRKSRHRRIKKQRRYERLAATSQLS 208
           GEQ N W +L   D  SRHR  K  RRYE L A S LS
Sbjct: 66  GEQPNPWDLLQPQDAMSRHRGAKPPRRYELLVAISLLS 103



>gi|15921441|ref|NP_377110.1|   62aa long conserved hypothetical protein [Sulfolobus tokodaii]
 gi|15622227|dbj|BAB66219.1|   62aa long conserved hypothetical protein [Sulfolobus tokodaii]
          Length = 62

 Score = 38.5 bits (88), Expect = 0.021
 Identities = 23/51 (45%), Positives = 27/51 (52%)
 Frame = -1

Query: 224 RKVTTGITGLWQPSVHSDVAF*SFDVGSSYHCEAEFTKCWIVHPPIGNVSW 72
           RKVT GITG  +   H D A    DVGSS+   A   K     P +G+VSW
Sbjct: 11  RKVTPGITGSSRARAHIDPAVCYIDVGSSHPGGAAAPKGRAARPLMGSVSW 61



>gi|14590152|ref|NP_142217.1|   hypothetical protein [Pyrococcus horikoshii]
 gi|7519378|pir||F71245   hypothetical protein PHS004 - Pyrococcus horikoshii
 gi|3256610|dbj|BAA29293.1|   58aa long hypothetical protein [Pyrococcus horikoshii]
          Length = 58

 Score = 33.1 bits (74), Expect = 0.88
 Identities = 23/55 (41%), Positives = 25/55 (45%)
 Frame = -1

Query: 236 ARGVRKVTTGITGLWQPSVHSDVAF*SFDVGSSYHCEAEFTKCWIVHPPIGNVSW 72
           AR  RK T GIT   +   H D       VGS +   A   K   VHP  GNVSW
Sbjct: 3   ARDDRKATLGITESSRARAHIDPEACYLAVGSPHPGPAAGAKGGGVHPLKGNVSW 57



>gi|7657166|ref|NP_055027.1|   homeo box C11; homeobox protein Hox-C11 [Homo sapiens]
 gi|13651009|ref|XP_012215.2|   similar to Homeobox protein Hox-C11 [Homo sapiens]
 gi|3287858|sp|O43248|HXCB_HUMAN   Homeobox protein Hox-C11
 gi|2661373|emb|CAA03876.1|   Hox protein [Homo sapiens]
          Length = 304

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 99  NNPTLGEFCFTMIGRADIE-GSKSNVAMNAWLPQASYPCGNFSDTSSFKLRRSKGSIGHA 275
           N+  LG FC         + G + + A N +LP  +Y    FS  SSF  +     I + 
Sbjct: 3   NSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYMPEFSTVSSFLPQAPSRQISYP 62

Query: 276 FTVRI 290
           ++ ++
Sbjct: 63  YSAQV 67



>gi|7516816|pir||G72579   hypothetical protein APE1919 - Aeropyrum pernix (strain K1)
 gi|5105611|dbj|BAA80924.1|   128aa long hypothetical protein [Aeropyrum pernix]
          Length = 128

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +3

Query: 42  KTNLSHDGLIPAHVP 86
           +T+LSHDGL PAHVP
Sbjct: 113 ETDLSHDGLNPAHVP 127



>gi|21300339|gb|EAA12484.1|   agCP11254 [Anopheles gambiae str. PEST]
          Length = 482

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 27  GHQ*GKTNLSHDGLIPAHVPYWWVNNPTLGEFCFTMIGRADIEGSKSNVAM 179
           GH+    +++H G        WW  N T+ ++   M+G+A+I    SNV M
Sbjct: 207 GHEIAVHSITHRG-----PEEWWSRNATIEDWFDEMVGQANIINRFSNVRM 252



>gi|24158778|pdb|1KB9|H   Chain H, Yeast Cytochrome Bc1 Complex
 gi|14277719|pdb|1EZV|G   Chain G, Structure Of The Yeast Cytochrome Bc1 Complex Co-
           Crystallized With An Antibody Fv-Fragment
 gi|20151125|pdb|1KYO|H   Chain H, Yeast Cytochrome Bc1 Complex With Bound Substrate
           Cytochrome C
 gi|20151136|pdb|1KYO|S   Chain S, Yeast Cytochrome Bc1 Complex With Bound Substrate
           Cytochrome C
          Length = 93

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 66  LIPAHVP-YWWVNNPTLGEFCFTMIGRADIE 155
           LIPA +  YWW N     EF ++  GR ++E
Sbjct: 59  LIPAGIYWYWWKNGNEYNEFLYSKAGREELE 89



>gi|6322295|ref|NP_012369.1|   Ubiquinol cytochrome-c reductase subunit 8 (11 kDa protein); Qcr8p
           [Saccharomyces cerevisiae]
 gi|418147|sp|P08525|UCRQ_YEAST   Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein
           QP-C (Ubiquinol-cytochrome C reductase complex 11 kDa
           protein) (Complex III subunit VIII)
 gi|626969|pir||S48138   ubiquinol-cytochrome-c reductase (EC 1.10.2.2) chain VIII - yeast
           (Saccharomyces cerevisiae)
 gi|312354|emb|CAA29065.1|   11 kDa subunit VIII (AA1-94) [Saccharomyces cerevisiae]
 gi|1008356|emb|CAA89461.1|   ORF YJL166w [Saccharomyces cerevisiae]
          Length = 94

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 66  LIPAHVP-YWWVNNPTLGEFCFTMIGRADIE 155
           LIPA +  YWW N     EF ++  GR ++E
Sbjct: 60  LIPAGIYWYWWKNGNEYNEFLYSKAGREELE 90






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Dec 9, 2002  8:40 PM
  Number of letters in database: 397,579,747
  Number of sequences in database:  1,247,039
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,503,465
Number of Sequences: 1247039
Number of extensions: 3423307
Number of successful extensions: 7993
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 7938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7986
length of database: 397,579,747
effective HSP length: 73
effective length of database: 306,545,900
effective search space used: 7357101600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)