BLASTX 2.2.5 [Nov-16-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1039752539-029708-7637

Query= 
         (334 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,247,039 sequences; 397,579,747 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7509739|pir||T33462  hypothetical protein Y40D12A.3 - Cae...    32   1.4   
gi|17554856|ref|NP_498459.1|  Predicted CDS, serpentine Rece...    32   1.4   
gi|25026547|ref|XP_203552.1|  expressed sequence AI593546 [M...    31   4.1   
gi|19353673|gb|AAH24801.1|  similar to unnamed protein produ...    31   4.1   

Alignments


>gi|7509739|pir||T33462   hypothetical protein Y40D12A.3 - Caenorhabditis elegans
          Length = 366

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 269 LCHVCCSDTWRYILVSSKFYYEVSGCELEMSSYYYLLPNCWLYFEV 132
           LC + C  TW  +++   F+  V G  L +S Y+    N  +YF V
Sbjct: 64  LCTMFCDFTWGILVIPMMFWSVVCGYTLGISKYFINSKNILMYFGV 109



>gi|17554856|ref|NP_498459.1|   Predicted CDS, serpentine Receptor, class H SRH-40 (srh-40)
           [Caenorhabditis elegans]
 gi|20198898|gb|AAC26947.2|   Serpentine receptor, class h protein 40 [Caenorhabditis elegans]
          Length = 352

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 269 LCHVCCSDTWRYILVSSKFYYEVSGCELEMSSYYYLLPNCWLYFEV 132
           LC + C  TW  +++   F+  V G  L +S Y+    N  +YF V
Sbjct: 64  LCTMFCDFTWGILVIPMMFWSVVCGYTLGISKYFINSKNILMYFGV 109



>gi|25026547|ref|XP_203552.1|   expressed sequence AI593546 [Mus musculus]
          Length = 408

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -3

Query: 269 LCHVCCSDT----WRYILVSSKFYYEVSGCELEMSSYYYLLPNCWL 144
           LC+ C S      W   +VSS+FY    G  L M    YLLP CW+
Sbjct: 168 LCYTCESAYRVLHWENPVVSSQFY----GALLGMVCMLYLLPLCWV 209



>gi|19353673|gb|AAH24801.1|   similar to unnamed protein product [Mus musculus]
          Length = 238

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -3

Query: 269 LCHVCCSDT----WRYILVSSKFYYEVSGCELEMSSYYYLLPNCWL 144
           LC+ C S      W   +VSS+FY    G  L M    YLLP CW+
Sbjct: 100 LCYTCESAYRVLHWENPVVSSQFY----GALLGMVCMLYLLPLCWV 141






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Dec 9, 2002  8:40 PM
  Number of letters in database: 397,579,747
  Number of sequences in database:  1,247,039
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,990,369
Number of Sequences: 1247039
Number of extensions: 3064239
Number of successful extensions: 6782
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6781
length of database: 397,579,747
effective HSP length: 86
effective length of database: 290,334,393
effective search space used: 6968025432
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)